f5n

Application mobile d'alignement de séquence guidée de référence

Mobile application for Reference Guided Sequence Alignment using Oxford Nanopore Technology Data

Overview

f5n can run the following on ARM devices,

1. [minimap2] https://github.com/lh3/minimap2 sequence alignment

2. [samtools] https://github.com/samtools/samtools sort

3. [samtools] https://github.com/samtools/samtools index

4. [f5c] https://github.com/hasindu2008/f5c index

5. [f5c] https://github.com/hasindu2008/f5c call-methylation

6. [f5c] https://github.com/hasindu2008/f5c event alignment

We build a standalone application and a cluster of nodes where a master orchestrates the other nodes. In this way, ONT data can be corrected for errors in the field, on the fly!

You can find out more from https://github.com/SanojPunchihewa/f5n